Eugene Ie

Google Publications

Previous Publications

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    CP motifs, Hap1 and Heme Signaling

    L. Zhang, C. Leslie, H. C. Lee, A. Kundaje, E. Ie, X. Xin, Y. Freund

    International Proceedings of the 15th International Conference on Cytochrome P450: Biochemistry, Biophysics, Functional Genomics (2007), pp. 45-51

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    Multi-class protein classification using adaptive codes

    Iain Melvin, Eugene Ie, Jason Weston, William Stafford Noble, Christina Leslie

    Journal of Machine Learning Research, vol. 8 (2007), pp. 1557-1581

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    SVM-fold: a tool for discriminative multi-class protein fold and superfamily recognition

    Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Stafford Noble, Christina Leslie

    BMC Bioinformatics (2007)

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    BioSpike: Efficient search for homologous proteins by indexing patterns

    Eugene Ie, Yoav Freund

    University of California, San Diego (2006)

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    Semi-supervised protein classification using cluster kernels

    Jason Weston, Christina Leslie, Eugene Ie, William Stafford Noble

    Semi-Supervised Learning, MIT Press (2006), pp. 329-346

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    Multi-class protein fold recognition using adaptive codes

    Eugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie

    Proceedings of the 22nd international conference on Machine learning (2005), pp. 329-336

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    Profile-based string kernels for remote homology detection and motif extraction

    Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina Leslie

    Journal of Bioinformatics and Computational Biology, vol. 3 (2005), pp. 527-550

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    Semi-supervised protein classification using cluster kernels

    Jason Weston, Christina S. Leslie, Eugene Ie, Dengyong Zhou, Andr, William Stafford Noble

    Bioinformatics, vol. 21 (2005), pp. 3241-3247

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    Profile-based string kernels for remote homology detection and motif extraction

    Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie

    Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference (CSB'04), pp. 152-160