General Science

72 Publications


    Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways

    Kai Kohlhoff, Diwakar Shukla, Morgan Lawrenz, Gregory Bowman, David Konerding, Dan Belov, Russ Altman, Vijay Pande

    Nature Chemistry, vol. 6 (2014), 15–21


    Current status and dynamics of mangrove forests of South Asia

    Chandra Giri, Jordan Long, Sawaid Abbas, R. Mani Murali, Faisal M. Qamer, David Thau

    Journal of Environmental Management (2014) (to appear)


    SSAC Advisory on Search List Processing

    Warren Kumari, Jaap Akkerhuis, Don Blumenthal

    ICANN SSAC Reports and Advisories, ICANN (2014), pp. 17


    Advisory on Internal Name Certificates

    Warren Kumari, Steve Crocker, Patrik Fältström, Ondrej Filip, James Galvin, Danny McPherson, Ram Mohan, Doron Shikmoni

    ICANN SSAC Reports and Advisories, ICANN (Internet Corporation for Assigned Names and Numbers) (2013)


    Behavior-Oriented Data Resource Management in Medical Sensing Systems

    Hyduke Noshadi, Foad Dabiri, Saro Meguerdichian, Miodrag Potkonjak, Majid Sarrafzadeh

    ACM Transactions on Sensor Networks (TOSN), vol. 9 (2013), 12:1-12:26


    Bridging the Gap Between Industry and Academia

    Joshua Tabak

    The 14th Annual Meeting of the Society for Personality and Social Psychology, New Orleans, Louisiana (2013)


    Herschel/PACS Survey of protoplanetary disks in Taurus/Auriga - Observations of [OI] and [CII], and far infrared continuum

    Christian Howard

    The Astrophysical Journal, vol. 776 (2013), pp. 21-45


    High-Resolution Global Maps of 21st-Century Forest Cover Change

    Rebecca Moore, Matt Hancher, David Thau

    Science, vol. 342 (2013), pp. 850-853


    On the Technology Prospects and Investment Opportunities for Scalable Neuroscience

    Thomas Dean, Biafra Ahanonu, Mainak Chowdhury, Anjali Datta, Andre Esteva, Daniel Eth, Nobie Redmon, Oleg Rumyantsev, Ysis Tarter

    ArXiv (2013)


    Optical design of a color-corrected 2.75 g visual loupe

    Ozan Cakmakci

    J. Optical Engineering, vol. 52(11) (2013)


    PRIME: Probabilistic Initial 3D Model Generation for Single-Particle Cryo-Electron Microscopy

    Hans Elmlund, Dominika Elmlund, Samy Bengio

    Structure, vol. 21 (2013), pp. 1299-1306


    Physically-based Grasp Quality Evaluation under Pose Uncertainty

    Junggon Kim, Kunihiro Iwamoto, James J.Kuffner, Yasuhiro Ota, Nancy S. Pollard

    IEEE Transactions on Robotics (2013)


    Systematic Analysis of Challenge-Driven Improvements in Molecular Prognostic Models for Breast Cancer

    Adam Margolin, Erhan Bilal, Erich Huang, Ben Sauerwine, Nicole Deflaux, Lamia Youseff, Tyler Pirtle, Craig Citro, Joseph L. Hellerstein

    Science Translational Medicine, vol. 5.181 (2013), 181re1-181re1


    Triple Wollaston-prism complete-Stokes imaging polarimeter

    John D. Perreault

    Optics Letters, vol. 38 (2013), pp. 3874-3877


    Unlocking the Potential of Conjoint Analysis/Discrete Choice Modeling and MaxDiff Scaling in Public Opinion and Survey Research

    Steven Ellis, Mario Callegaro, Chris Chapman

    American Association for Public Opinion Research (2013), Panel


    Web Coverage in the UK and its Potential Impact on General Population Web Surveys

    Mario Callegaro

    Web surveys for the general population: How, why and when?, 25-26 February 2013. Institute of Education, London (2013)


    You Are What You Emote: Emotional Facial Expressions Impact Sexual Orientation Judgments

    Joshua Tabak, Sapna Cheryan

    In the symposium,, 25th Annual Convention of the Association for Psychological Science, Washington, D.C. (2013)


    A unified multitask architecture for predicting local protein properties

    Yanjun Qi, Merja Osh, Jason Weston, William Stafford Noble

    PLoS ONE (2012) (to appear)


    Advisory on Impacts of Content Blocking via the Domain Name System

    Warren Kumari, Alain Aina, Jaap Akkerhuis, Don Blumenthal, KC Claffy, David Conrad, Patrik Fältström, James Galvin, Jason Livingood, Danny McPherson, Ram Mohan, Paul Vixie

    ICANN SSAC Reports and Advisories, ICANN (Internet Corporation for Assigned Names and Numbers) (2012)


    Algorithmic Thermodynamics

    John Baez, Michael Stay

    Mathematical Structures in Computer Science, vol. 22 (2012), pp. 771-787


    Google's Hybrid Approach to Research

    Alfred Spector, Peter Norvig, Slav Petrov

    Communications of the ACM, vol. 55 Issue 7 (2012), pp. 34-37


    Life Estimation of Pressurized-Air Solar-Thermal Receiver Tubes

    David Fork, John Fitch, Shawn Ziaei, Robert I. Jetter

    ASME Journal of Solar Energy Engineering (2012) (to appear)


    Molli: Interactive Visualization for Exploratory Protein Analysis

    Sara L. Su, Connor Gramazio, Megan Strait, Caitlin Crumm, Daniela Extrum-Fernandez, Matt Menke, Lenore Cowen

    IEEE Computer Graphics & Applications, vol. 32 (2012), pp. 62-69


    Norovirus Disease Surveillance Using Google Internet Query Share Data

    Rishi Desai, Aron J. Hall, Benjamin A. Lopman, Yair Shimshoni, Marcus Rennick, Niv Efron, Yossi Matias, Manish M. Patel, Umesh D. Parashar

    Clinical Infectious Diseases (2012)


    Real-Time Human Pose Tracking from Range Data

    Varun Ganapathi, Christian Plagemann, Daphne Koller, Sebastian Thrun

    Proceedings of the European Conference on Computer Vision (ECCV) (2012) (to appear)


    Search Inside Yourself

    Chade-Meng Tan

    HarperOne (2012)


    Semantics-driven sensor configuration for energy reduction in medical sensor networks

    James Wendt, Saro Meguerdichian, Hyduke Noshadi, Miodrag Potkonjak

    Proceedings of the 2012 ACM/IEEE international symposium on Low power electronics and design, ACM, pp. 303-308


    Spatiotemporal Assignment of Energy Harvesters on a Self-Sustaining Medical Shoe

    James Wendt, Vishwa Goudar, Hyduke Noshadi, Miodrag Potkonjak

    2012 IEEE Sensors, IEEE, pp. 1-4


    Team Geek: A Software Developer's Guide to Working Well with Others

    Brian W. Fitzpatrick, Ben Collins-Sussman

    O'Reilly Media, 1005 Gravenstein Highway North, Sebastopol, CA 95472 (2012), pp. 180


    Channeling the data deluge

    Jason Swedlow, Gianluigi Zanetti, Christoph Best

    Nature Methods, vol. 8 (2011), pp. 463


    Detecting remote evolutionary relationships among proteins by large-scale semantic embedding

    Iain Melvin, Jason Weston, Christina Leslie, William Stafford Noble

    PLoS Computational Biology (2011)


    Entrepreneurial Innovation at Google

    Patrick Copeland, Alberto Savoia

    IEEE: Computer, vol. 0018-9162/11 (2011), pp. 7


    How is it done? A multinational survey of YouTube user satisfaction

    Joshua Tabak

    University of Washington, Seattle, WA (2011)


    Sticking Together: Handcrafting Personalized Communication Interfaces.

    Natalie Freed, Jie Qi, Adam Stephenson, Hayes Raffle, Leah Buechley, Cynthia Breazeal

    ACM International Conference on Interaction Design and Children (IDC) 2011, ACM


    Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance

    Emily H. Chan, Vikram Sahai, Corrie Conrad, John S. Brownstein

    PLoS Neglected Tropical Diseases, vol. 5 Issue 5 (2011)


    EMI Failure Analysis Techniques: II. Joint Time-Frequency Analysis

    Weifeng Pan

    IEEE EMC Society Newsletters, vol. 226 (2010), pp. 31-34


    EMI Failure Analysis Techniques: III. Correlation Analysis

    Weifeng Pan

    IEEE EMC Society Newsletters, vol. 227 (2010), pp. 45-49


    Energy Optimization in Wireless Medical Systems Using Physiological Behavior

    Hyduke Noshadi, Foad Dabiri, Saro Meguerdichian, Miodrag Potkonjak, Majid Sarrafzadeh

    In Proceedings of the ACM, BMES conference of Wireless Health, ACM (2010), pp. 128-136


    Google’s Innovation Factory: Testing, Culture, And Infrastructure

    Patrick Copeland

    IEEE International Conference on Software Testing, Verification and Validation (2010), pp. 4


    Minimizing off-target signals in RNA fluorescent in situ hybridization

    Aaron Arvey, Anita Hermann, Cheryl C. Hsia, Eugene Ie, Yoav Freund, William McGinnis

    Nucleic Acids Research (2010)


    Planet-Planet Scattering in Planetesimal Disks. II. Predictions for Outer Extrasolar Planetary Systems

    Sean N. Raymond, Philip J. Armitage, Noel Gorelick

    The Astrophysical Journal, vol. 711 (2010), pp. 772-795


    Semi-Supervised Multi-Task Learning for Predicting Interactions between HIV-1 and Human Proteins

    Yanjun Qi, Oznur Tastan, Jaime Carbonell, Judith Klein-Seetharaman, Jason Weston

    ECCB (2010)


    The Politics of Search: A Decade Retrospective.

    Laura Ann Granka

    The Information Society Journal, vol. 26 (2010), pp. 364-374


    Using Bezier Curve to Improve the Accuracy in Integrated Circuit Design Analysis

    Eric Y. Chen, May Huang

    International Conference on Convergence and Hybrid Information Technology, ACM Press (2010)


    A transcription factor affinity-based code for mammalian transcription initiation

    M Megraw, F Pereira, ST Jensen, U Ohler, AG Hatzigeorgiou

    Genome Research, vol. 19 (2009), pp. 644-56


    ACM's annual report

    Stuart I. Feldman

    Commun. ACM, vol. 52 (2009), pp. 33-37


    Detecting influenza epidemics using search engine query data

    Jeremy Ginsberg, Matthew Mohebbi, Rajan Patel, Lynnette Brammer, Mark Smolinski, Larry Brilliant

    Nature, vol. 457 (2009), pp. 1012-1014


    EMI Failure Analysis Techniques: I. Frequency Spectrum Analysis

    Weifeng Pan

    IEEE EMC Society Newsletters, vol. 223 (2009), pp. 65-70


    Haplotype Inference Constrained by Plausible Haplotype Data

    Michael R. Fellows, Tzvika Hartman, Danny Hermelin, Gad M. Landau, Frances Rosamond, Liat Rozenberg

    CPM '09: Proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching, Springer-Verlag, Berlin, Heidelberg (2009), pp. 339-352


    Methodological Review: Empirical distributional semantics: Methods and biomedical applications

    Trevor Cohen, Dominic Widdows

    Journal of Biomedical Informatics, vol. 42 (2009), pp. 390-405


    Reflective Random Indexing and Indirect Inference: A Scalable Method for Discovery of Implicit Connections

    Trevor Cohen, Roger Schaneveldt, Dominic Widdows

    Journal of Biomedical Informatics (2009)


    Timing properties of gene expression responses to environmental changes

    Gal Chechik, Daphne Koller

    J. Computational Biology, vol. 9 (2009)


    A dynamical perspective on additional planets in 55 Cancri

    Sean N. Raymond, Rory Barnes, Noel Gorelick

    The Astrophysical Journal, vol. 689, Issue 1 (2008), pp. 478-491


    A new beginning, a fond farewell

    Stuart I. Feldman

    Commun. ACM, vol. 51 (2008), pp. 5-5


    ACM annual report for FY07

    Stuart I. Feldman

    Commun. ACM, vol. 51 (2008), pp. 27-34


    Activity Motifs Reveal Principles of Timing in Transcriptional Control of the Yeast Metabolic Network

    Gal Chechik, Eugene Oh, Oliver Rando, Jonathan Weissman, Aviv Regev, Daphne Koller

    Nature Biotechnology, vol. 26 (11) (2008), pp. 1251-1259


    Every Last Drop: Managing our way out of the water crisis

    Rijsberman, Frank R

    Boston Review, vol. 33 (2008), pp. 7-12


    Fifty years and still growing

    Stuart I. Feldman

    Commun. ACM, vol. 51 (2008), pp. 23-23


    GO Based Hierarchical Framework for Inference of Gene Regulatory Networks

    Kumar Abhishek, Dr. Harish Karnick

    WORLDCOMP'08 (2008) (to appear)


    Mean Motion Resonances from Planet-Planet Scattering

    Raymond, Sean N, Barnes, Rory, Armitage, Philip J, Gorelick, Noel

    The Astrophysical Journal,, vol. 687, Issue 2 (2008), pp. 107-110


    North polar region of Mars: Advances in stratigraphy, structure, and erosional modification

    Ken L. Tanaka, J. Alexis P. Rodriguez, James A. Skinner Jr, Mary C. Bourke, Corey M. Fortezzo, Kenneth E. Herkenhoff, Eric J. Kolb, Chris H. Okubo

    Icarus, vol. 196 (2008), pp. 318-358


    A multi-agent based framework for the simulation of human and social behaviors during emergency evacuations

    Xiaoshan Pan, Charles S. Han, Ken Dauber, Kincho H. Law

    AI & Society, vol. 22, no. 2 (2007)


    ACM's Past Helps Steer Its Future

    Stuart I. Feldman

    Communications of the ACM, vol. 50, no. 5 (2007), pp. 10


    GO Based Inference of Gene Regulatory Networks from Gene Expression Data

    Kumar Abhishek, Harish Karnick

    WORLDCOMP '07 (2007)


    The rewards of ACM's awards

    Stuart I. Feldman

    Commun. ACM, vol. 50 (2007), pp. 17-18


    Why There's Antifreeze in Your Toothpaste: The Chemistry of Household Ingredients

    Simon Quellen Field

    Chicago Review Press, 814 N. Franklin St. 814 N. Franklin St. Chicago, IL 60610 (2007), pp. 240


    Predicting EMG Data from M1 Neurons with Variational Bayesian Least Squares

    Jo-Anne Ting, Aaron D'Souza, Kenji Yamamoto, Toshinori Yoshioka, Donna Hoffman, Shinji Kakei, Lauren Sergio, John Kalaska, Mitsuo Kawato, Peter Strick, Stefan Schaal

    Advances in Neural Information Processing Systems 18, MIT Press (2006)


    Return of Gonzo Gizmos

    Simon Quellen Field

    Chicago Review Press, 814 North Franklin Street, Chicago, Illinois, 60610 (2006), pp. 1-147


    Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees

    Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz

    International Conference on Computational Science (2) (2006), pp. 799-806


    Oral Mucosal Microvascular Network Abnormalities in De Novo Mutation Achondroplasia

    C. D. Felice, S. Parrini, G. D. Maggio, R. N. Laurini, K. Shirriff

    Fractals, vol. 13 (2005)


    Finite-State Transducers in Computational Biology

    Corinna Cortes, Mehryar Mohri

    Tutorial presented at the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005), Detroit, MI


    Computers, Use Of

    Peter Norvig

    Encyclopedia of Space Sciences: Macmillan Science Library (2002)