Ryan McDonald

More info on my home page and Google Scholar page

Google Publications

Previous Publications

  •   

    An automated procedure to identify biomedical articles that contain cancer-associated gene variants

    Ryan McDonald, R Scott Winters, Claire K Ankuda, Joan A Murphy, Amy E Rogers, Fernando Pereira, Marc S Greenblatt, Peter S White

    Human Mutation, vol. 27 (2006), pp. 957-64

  •   

    Automated recognition of malignancy mentions in biomedical literature

    Yang Jin, Ryan T. McDonald, Kevin Lerman, Mark A. Mandel, Steven Carroll, Mark Y. Liberman, Fernando C. Pereira, Raymond S. Winters, Peter S. White

    BMC Bioinformatics, vol. 7 (2006), pp. 492

  •  

    Discriminative Sentence Compression with Soft Syntactic Constraints

    Ryan McDonald

    Proceedings of EACL (2006)

  •   

    Domain Adaptation with Structural Correspondence Learning

    John Blitzer, Ryan McDonald, Fernando Pereira

    EMNLP 2006: 2006 Conference on Empirical Methods in Natural Language Processing, pp. 120-128

  •   

    Multilingual Dependency Parsing with a Two-Stage Discriminative Parser

    Ryan McDonald, Kevin Lerman, Fernando Pereira

    Tenth Conference on Computational Natural Language Learning (CoNLL-X) (2006)

  •  

    Online Learning of Approximate Dependency Parsing Algorithms

    Ryan McDonald, Fernando Pereira

    Proceedings of EACL (2006)

  •   

    Online Learning of Approximate Dependency Parsing Algorithms

    Ryan McDonald, Fernando Pereira

    11th Conference of the European Chapter of the Association for Computational Linguistics: EACL 2006, pp. 81-88

  •  

    Automatically annotating documents with normalized gene lists

    Jeremiah Crim, Ryan McDonald, Fernando Pereira

    BMC Bioinformatics (2005)

  •  

    Flexible Text Segmentation with Structured Multilabel Classification

    Ryan McDonald, Koby Crammer, Fernando Pereira

    Proceedings of HLT-EMNLP (2005)

  •  

    Identifying gene and protein mentions in text using conditional random fields

    Ryan McDonald, Fernando Pereira

    BMC Bioinformatics (2005)

  •  

    Non-Projective Dependency Parsing using Spanning Tree Algorithms

    Ryan McDonald, Fernando Pereira, Kiril Ribarov, Jan Hajic

    Proceedings of HLT-EMNLP (2005)

  •   

    Non-Projective Dependency Parsing using Spanning Tree Algorithms

    Ryan T. McDonald, Fernando Pereira, Kiril Ribarov, Jan Hajic

    HLT/EMNLP (2005)

  •  

    Online Large-Margin Training of Dependency Parsers

    Ryan McDonald, Koby Crammer, Fernando Pereira

    Proceedings of ACL (2005)

  •   

    Online Large-Margin Training of Dependency Parsers

    Ryan McDonald, Koby Crammer, Fernando Pereira

    43rd Annual Meeting of the Association for Computational Linguistics (ACL 2005)

  •  

    Simple Algorithms for Complex Relation Extraction with Applications to Biomedical IE

    Ryan McDonald, Seth Kulick, Fernando Pereira, Scott Winters, Yang Jin, Pete White

    Proceedings of ACL (2005)

  •   

    Simple Algorithms for Complex Relation Extraction with Applications to Biomedical IE

    Ryan McDonald, Fernando Pereira, Seth Kulick, Scott Winters, Yang Jin, Pete White

    43rd Annual Meeting of the Association for Computational Linguistics (ACL 2005)

  •  

    An entity tagger for recognizing acquired genomic variations in cancer literature

    Ryan McDonald, Scott Winters, Mark Mandel, Yang Jin, Pete White, Fernando Pereira

    Bioinformatics (2004)

  •  

    Integrated Annotation for Biomedical Information Extraction

    Seth Kulick, Anne Bies, Mark Liberman, Mark Mandel, Ryan McDonald, Martha Palmer, Andrew Schein, Lyle Ungar, Scott Winters, Pete White

    Proceedings of BioLink (2004)

  •  

    Flexible Web Document Analysis for Delivery to Narrow-Bandwidth Devices

    Gerald Penn, Jianying Hu, Hengbin Luo, Ryan McDonald

    Proceedings if ICDAR (2001)